Structural Characterization of a C1q/TNF-α Domain Containing Lectin OXYL in the Feather Star Anneissia Japonica

Sultana Rajia
Center for Interdisciplinary Research, Varendra University, Rajshahi, Rajshahi-6204, Bangladesh rajia@vu.edu.bd
Kenichi Kamata
Department of Materials and Applied Chemistry, College of Science and Technology, Nihon University, Kanda-Surugadai 1-5-1, Chiyoda-Ku, Tokyo 101-0062, Japan & Graduate School of Biomedical Sciences, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-Ku, Yokohama 230-0045, Japan kamata.kenichi@nihon-u.ac.jp
Marco Gerdol
Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy mgerdol@units.it
Imtiaj Hasan
Department of Microbiology, Faculty of Biological Science, University of Rajshahi & Department of Biochemistry and Molecular Biology, Faculty of Science, University of Rajshahi, Rajshahi-6205, Bangladesh imtiajbio@ru.ac.bd
Namiho Matsuzaki
Graduate School of NanoBio Sciences, Yokohama City University, 22-2, Seto, Kanazawa-Ku, Yokohama 236-0027, Japan n255268g@yokohama-cu.ac.jp
Keita Yamamoto
Graduate School of NanoBio Sciences, Yokohama City University, 22-2, Seto, Kanazawa-Ku, Yokohama 236-0027, Japan n255273e@yokohama-cu.ac.jp
Suzuna Yoshimoto
Graduate School of NanoBio Sciences, Yokohama City University, 22-2, Seto, Kanazawa-Ku, Yokohama 236-0027, Japan n245272g@yokohama-cu.ac.jp
Mayuka Ohkawa
Graduate School of NanoBio Sciences, Yokohama City University, 22-2, Seto, Kanazawa-Ku, Yokohama 236-0027, Japan n235351e@yokohama-cu.ac.jp
Bishnu Pada Chatterjee
Department of Oncogene Regulation, Chittaranjan National Cancer Institute, Kolkata, WB, India cbishnup@gmail.com
Yukiko Ogawa
Graduate School of Pharmaceutical Sciences, Nagasaki International University, 2825-7, Huis Ten Bosch, Sasebo 859-3298, Japan yogawa@niu.ac.jp
Sarkar Mohammad Abe Kawsar
Department of Chemistry, Faculty of Science, University of Chittagong, Chittagong-4331, Bangladesh akawsarabe@yahoo.com
Tatsuya Kawasaki
Graduate School of Pharmaceutical Sciences, Nagasaki International University, 2825-7, Huis Ten Bosch, Sasebo 859-3298, Japan kawasakit@niu.ac.jp
Hisanori Kohtsuka
Misaki Marine Biological Station, School of Science, The University of Tokyo, Miura 38‑0225, Japan kohtsuka@mmbs.s.u-tokyo.ac.jp
Masao Yamada
Graduate School of NanoBio Sciences, Yokohama City University, 22-2, Seto, Kanazawa-Ku, Yokohama 236-0027, Japan & emukk LLC, Kuwana 511-0902, Japan yamada_masao@emukk.com
Yuki Fujii
Graduate School of Pharmaceutical Sciences, Nagasaki International University, 2825-7, Huis Ten Bosch, Sasebo 859-3298, Japan yfujii@niu.ac.jp
Yasuhiro Ozeki (Corresponding Author)
Graduate School of NanoBio Sciences, Yokohama City University, 22-2, Seto, Kanazawa-Ku, Yokohama 236-0027, Japan ozeki@yokohama-cu.ac.jp

Published: May 2025

DOI: https://doi.org/10.64296/vijir.v1i1.03

Issue: Vol. 1 No. 1 (2025): VIJIR

Abstract

The structure of a lectin, OXYL, derived from the feather star, Anneissia japonica (phylum Echinodermata), was analyzed from biochemistry, informatics, and 3D structural prediction. OXYL’s primary structure resembled the globular domain of complement C1q in vertebrates. Structural simulations identified OXYL as part of the C1q/TNF superfamily, characterized by a jellyroll β-sandwich fold. The subunits can form monomer to nonamer (9-mer), with trimers being the most stable. However, gel permeation chromatography indicated tetramers as the significant form. In hemagglutination inhibition tests, OXYL bound type-2 N-acetyllactosamine (LacNAc: Galβ1-4GlcNAc) and inhibited agglutination but did not bind lactose (Lac: Galβ1-4Glc). Glycan microarray analysis with 20 immobilized glycans confirmed OXYL’s specificity for type-2 LacNAc and its sialic acid α2-3 linkage. The structural simulation showed a suitable molecular docking between type-2 LacNAc and the lectin rather than lactose. OXYL bound to the LacNAc glycan on the microarray was also elucidated to capture human IgG. This finding suggests that the invertebrate C1q/TNF family lectin will mimic vertebrate C1qs, despite lacking evolutionally antibody systems, possess the potential to interact with antibodies.

Keywords: Lectin; C1q/TNF-α; β-Sandwich; Immunoglobulin G; Feather star; Anneissia japonica

The purpose of this paper is to inspire logical reasoning.

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